Research
Recursive reduction quadrature for the evaluation of Laplace layer potentials in three dimensions, S. Jiang and H. Zhu, arxiv, 2024
A high-order quadrature rule is constructed for the evaluation of Laplace single and double layer potentials and their normal derivatives on smooth surfaces in three dimensions. The construction begins with a harmonic approximation of the density on each patch, which allows for a natural harmonic polynomial extension in a volumetric neighborhood of the patch in the ambient space. Then by the general Stokes theorem, singular and nearly singular surface integrals are reduced to line integrals preserving the singularity of the kernel, instead of the standard origin-centered 1-forms that require expensive adaptive integration. These singularity-preserving line integrals can be semi-analytically evaluated using singularity-swap quadrature. In other words, the evaluation of singular and nearly singular surface integrals is reduced to function evaluations on the vertices on the boundary of each patch. The recursive reduction quadrature largely removes adaptive integration that is needed in most existing high-order quadratures for singular and nearly singular surface integrals, resulting in exceptional performance. The scheme achieves twelve-digit accuracy uniformly for close evaluations and offers a speedup of five times or more in constructing the sparse quadrature-correction matrix compared to previous state-of-the-art quadrature schemes.
Shape optimization of slip-driven axisymmetric microswimmers, R. Liu, H. Zhu, H. Guo, M. Bonnet, and S. Veerapaneni, Accepted in SIAM Journal on Scientific Computing, 2024
In this work, we develop a computational framework that aims at simultaneously optimizing the shape and the slip velocity of an axisymmetric microswimmer suspended in a viscous fluid. We consider shapes of a given reduced volume that maximize the swimming efficiency, i.e., the (size-independent) ratio of the power loss arising from towing the rigid body of the same shape and size at the same translation velocity to the actual power loss incurred by swimming via the slip velocity. The optimal slip and efficiency (with shape fixed) are here given in terms of two Stokes flow solutions, and we then establish shape sensitivity formulas of adjoint-solution that provide objective function derivatives with respect to any set of shape parameters on the sole basis of the above two flow solutions. Our computational treatment relies on a fast and accurate boundary integral solver for solving all Stokes flow problems. We validate our analytic shape derivative formulas via comparisons against finite-difference gradient evaluations, and present several shape optimization examples.
Hydrodynamic bound states of rotating micro-cylinders in a confining geometry, H. Guo, Y. Man, and H. Zhu, Physical Review Fluids, 2024
Many microswimmers propel themselves by rotating microcylindrical organelles such as flagella or cilia. These cylindrical organelles almost never live in free space, yet their motions in a confining geometry can be counterintuitive. For example, one of the intriguing yet classical results in this regard is that a rotating cylinder next to a plane wall does not generate any net force in Newtonian fluids and therefore does not translate. In this work we employ analytical and numerical tools to investigate the motions of microcylinders under prescribed torques in a confining geometry. We show that a cylinder pair can form four nontrivial hydrodynamic bound states depending on the relative position within the confinement. Our analysis shows that the distinct states are the results of competing effects of the hydrodynamic interactions within the cylinder pair and between the active cylinders and the confinement.
A fast, high-order scheme for evaluating volume potentials on complex 2D geometries via area-to-line integral conversion and domain mappings, T. Anderson, H. Zhu, and S. Veerapaneni, Journal of Computational Physics, 2023
While potential theoretic techniques have received significant interest and found broad success in the solution of linear partial differential equations (PDEs) in mathematical physics, limited adoption is reported in the case of nonlinear and/or inhomogeneous problems (i.e. with distributed volumetric sources) owing to outstanding challenges in producing a particular solution on complex domains while simultaneously respecting the competing ideals of allowing complete geometric flexibility, enabling source adaptivity, and achieving optimal computational complexity. This article presents a new high-order accurate algorithm for finding a particular solution to the PDE by means of a convolution of the volumetric source function with the Green's function in complex geometries. Utilizing volumetric domain decomposition, the integral is computed over a union of regular boxes (lending the scheme compatibility with adaptive box codes) and triangular regions (which may be potentially curved near boundaries). Singular and near-singular quadrature is handled by converting integrals on volumetric regions to line integrals bounding a reference volume cell using cell mappings and elements of the Poincaré lemma, followed by leveraging existing one-dimensional near-singular and singular quadratures appropriate to the singular nature of the kernel.
Shape optimization of peristaltic pumps transporting rigid particles in Stokes flow, M. Bonnet, R. Liu, S. Veerapaneni and H. Zhu, SIAM Journal on Scientific Computing, 2023
This paper presents a computational approach for finding the optimal shapes of peristaltic pumps transporting rigid particles in Stokes flow. In particular, we consider shapes that minimize the rate of energy dissipation while pumping a prescribed volume of fluid, number of particles and/or distance traversed by the particles over a set time period. Our approach relies on a recently developed fast and accurate boundary integral solver for simulating multiphase flows through periodic geometries of arbitrary shapes. In order to fully capitalize on the dimensionality reduction feature of the boundary integral methods, shape sensitivities must ideally involve evaluating the physical variables on the particle or pump boundaries only. We show that this can indeed be accomplished owing to the linearity of Stokes flow. The forward problem solves for the particle motion in a slip-driven pipe flow while the adjoint problems in our construction solve quasi-static Dirichlet boundary value problems backwards in time, retracing the particle evolution. The shape sensitivies simply depend on the solution of one forward and one adjoint (for each shape functional) problems. We validate these analytic shape derivative formulas by comparing against finite-difference based gradients and present several examples showcasing optimal pump shapes under various constraints.
High-order close evaluation of Laplace layer potentials: A differential geometric approach , H. Zhu and S. Veerapaneni, SIAM Journal on Scientific Computing, 2022
This paper presents a new approach for solving the close evaluation problem in three dimensions, commonly encountered while solving linear elliptic partial differential equations via potential theory. The goal is to evaluate layer potentials close to the boundary over which they are defined. The approach introduced here converts these nearly-singular integrals on a patch of the boundary to a set of non-singular line integrals on the patch boundary using the Stokes theorem on manifolds. A function approximation scheme based on harmonic polynomials is designed to express the integrand in a form that is suitable for applying the Stokes theorem. As long as the data---the boundary and the density function---is given in a high-order format, the double-layer potential and its derivatives can be evaluated with high-order accuracy using this scheme both on and off the boundary. In particular, we present numerical results demonstrating seventh-order convergence on a smooth, warped torus example achieving 10-digit accuracy in evaluating double layer potential at targets that are arbitrarily close to the boundary.
Optimal ciliary locomotion of axisymmetric microswimmers, H. Guo, H. Zhu, R. Liu, M. Bonnet and S. Veerapaneni, Journal of Fluid Mechanics, 2021
Many biological microswimmers locomote by periodically beating the densely-packed cilia on their cell surface in a wave-like fashion. While the swimming mechanisms of ciliated microswimmers have been extensively studied both from the analytical and the numerical point of view, the optimization of the ciliary motion of microswimmers has received limited attention, especially for non-spherical shapes. In this paper, using an envelope model for the microswimmer, we numerically optimize the ciliary motion of a ciliate with an arbitrary axisymmetric shape. The forward solutions are found using a fast boundary integral method, and the efficiency sensitivities are derived using an adjoint-based method. Our results show that a prolate microswimmer with a 2:1 aspect ratio shares similar optimal ciliary motion as the spherical microswimmer, yet the swimming efficiency can increase two-fold. More interestingly, the optimal ciliary motion of a concave microswimmer can be qualitatively different from that of the spherical microswimmer, and adding a constraint to the cilia length is found to improve, on average, the efficiency for such swimmers.
Optimal slip velocities of micro-swimmers with arbitrary axisymmetric shapes , H. Guo, H. Zhu, R. Liu, M. Bonnet and S. Veerapaneni, Journal of Fluid Mechanics, 2021
This paper presents a computational approach for finding the optimal shapes of peristaltic pumps transporting rigid particles in Stokes flow. In particular, we consider shapes that minimize the rate of energy dissipation while pumping a prescribed volume of fluid, number of particles and/or distance traversed by the particles over a set time period. Our approach relies on a recently developed fast and accurate boundary integral solver for simulating multiphase flows through periodic geometries of arbitrary shapes. In order to fully capitalize on the dimensionality reduction feature of the boundary integral methods, shape sensitivities must ideally involve evaluating the physical variables on the particle or pump boundaries only. We show that this can indeed be accomplished owing to the linearity of Stokes flow. The forward problem solves for the particle motion in a slip-driven pipe flow while the adjoint problems in our construction solve quasi-static Dirichlet boundary value problems backwards in time, retracing the particle evolution. The shape sensitivies simply depend on the solution of one forward and one adjoint (for each shape functional) problems. We validate these analytic shape derivative formulas by comparing against finite-difference based gradients and present several examples showcasing optimal pump shapes under various constraints.
Simulating cilia-driven mixing and transport in complex geometries, H. Guo, H. Zhu and S. Veerapaneni, Physical Review Fluids, 2020
Cilia and flagella are self-actuated microtubule-based structures that are present on many cell surfaces, ranging from the outer surface of single-cell organisms to the internal epithelial surfaces in larger animals. A fast and robust numerical method that simulates the coupled hydrodynamics of cilia and the constituent particles in the fluid such as rigid particles, drops or cells would be useful to not only understand several disease and developmental pathologies due to ciliary dysfunction but also to design microfluidic chips with ciliated cultures for some targeted functionality---e.g., maximizing fluid transport or particle mixing. In this paper, we develop a hybrid numerical method that employs a boundary integral method for handling the confining geometries and the constituent rigid particles and the method of regularized Stokeslets for handling the cilia. We provide several examples demonstrating the effects of confining geometries on cilia-generated fluid mixing as well as the cilia-particle hydrodynamics.
Solution of Stokes flow in complex nonsmooth 2D geometries via a linear-scaling high-order adaptive integral equation scheme, B. Wu, H. Zhu, A. Barnett and S. Veerapaneni, Journal of Computational Physics, 2020
We present a fast, high-order accurate and adaptive boundary integral scheme for solving the Stokes equations in complex, possibly nonsmooth, geometries in two dimensions. The key ingredient is a set of panel quadrature rules capable of evaluating weakly-singular, nearly-singular and hyper-singular integrals to high accuracy. Near-singular integral evaluation, in particular, is done using an extension of the scheme developed in J. Helsing and R. Ojala, JCP (2008). The boundary of the given geometry is ``panelized'' automatically to achieve user-prescribed precision. We found that this adaptive mesh refinement procedure works well in practice even in the case of complex geometries with large number of corners. In one example, for instance, a model 2D vascular network with 378 corners required less than 200K discretization points to obtain a 9-digit solution accuracy.